mac下通過(guò)終端運(yùn)行conda 環(huán)境中的deeptools,出現(xiàn)如下的報(bào)錯(cuò):
ImportError: dlopen(/miniconda3/envs/deeptools/lib/python3.7/site-packages/pysam/libcutils.cpython-37m-darwin.so, 2): Library not loaded: @rpath/libcsamtools.cpython-37m-darwin.so
Referenced from: /miniconda3/envs/deeptools/lib/python3.7/site-packages/pysam/libcutils.cpython-37m-darwin.so
Reason: image not found
擔(dān)心在base環(huán)境中,deeptools與其它軟件包出現(xiàn)沖突,因此重新創(chuàng)建了獨(dú)立的虛擬環(huán)境,安裝deeptools后,仍然出現(xiàn)同樣的報(bào)錯(cuò);
重現(xiàn)安裝或者升級(jí)pysam包,均未能解決問(wèn)題。
參考:https://www.biostars.org/p/202965/
嘗試降級(jí)pysam包,
$ conda install pysam==0.8.4
最終在低版本python=2.7.16的環(huán)境中,pysam包降級(jí)至0.8.4,安裝deeptools=2.5.7成功