Python爬蟲練習(xí)(二)爬取NCBI pubmed搜索結(jié)果doi號(hào)并進(jìn)行文獻(xiàn)下載(requests+xpath+正則)

繼上文的requests+正則解析http://www.itdecent.cn/p/c4c041459f58,接下來使用requests+re+xpath解析。用pubmed的高級(jí)搜索不知道為什么,比如用關(guān)鍵字1 關(guān)鍵字2搜索,總是會(huì)有缺少一個(gè)關(guān)鍵字的情況,就算用AND連接也是這樣,給文獻(xiàn)的搜索造成了很大的麻煩,所以就用爬蟲提取關(guān)鍵字都出現(xiàn)的結(jié)果的doi號(hào)然后調(diào)用sci-hub地址下載。
用法:運(yùn)行代碼。然后輸入關(guān)鍵字,如"human evolution" "mammalia“,這是兩個(gè)關(guān)鍵字,用雙引號(hào)圈起來,如果你輸入human evolution mammlia不加雙引號(hào),那么human evolution將不會(huì)緊密連在一起搜索,這是三個(gè)關(guān)鍵字。接下來確認(rèn)下載的文件夾,輸入y或者n確認(rèn)是否直接下載pdf還是將下載地址寫入download_url.txt這個(gè)文件。后續(xù)也許還會(huì)寫爬取Google學(xué)術(shù)的類似類,也會(huì)放到這個(gè)module里面,會(huì)同時(shí)更新到我的github上https://github.com/ijustwanthaveaname/web-crawler/blob/main/%E7%AC%AC%E4%BA%8C%E7%AB%A0%EF%BC%9Arequest%E6%A8%A1%E5%9D%97%E5%9F%BA%E7%A1%80/searchpaper.py

import requests
import re
import os
from lxml import etree


class Searchpubmed:
    def __init__(self, term):
        self.__term = term
        self.__headers = {
            "User-Agent": "Mozilla/5.0 (Windows NT 10.0; Win64; x64) AppleWebKit/537.36 \
              (KHTML, like Gecko) Chrome/83.0.4103.97 Safari/537.36"
        }
        self.url = "https://pubmed.ncbi.nlm.nih.gov/"
        self.__size, self.__page = 200, 1
        self.__param = {}
        self.param = {
            "term": self.__term,
            "size": self.__size,
            "page": self.__page
        }
        self.__doi, self.__doi_list, self.__down_url = [], [], []
        self.__response, self.__page_text, self.__step_num, self.__results_amount, \
        self.__tree, self.__snippet, self.__citation, self.__title = [None]*8

    def get_text(self, url, param):
        self.__response = requests.get(url=url, params=param, headers=self.__headers)
        self.__page_text = self.__response.text
        return self.__page_text

    @staticmethod
    def __format_text(xpathelement):
        xpathelement = "".join(xpathelement.xpath(".//text()")).replace("<b>", "").replace("</b>", "").lower()
        return xpathelement

    def get_doi(self, page_text):
        self.__tree = etree.HTML(page_text)
        self.__title = self.__tree.xpath("http://div[@class='docsum-content']/a")
        self.__snippet = self.__tree.xpath("http://div[@class='full-view-snippet']")
        self.__citation = self.__tree.xpath("http://span[@class='docsum-journal-citation full-journal-citation']")
        for title, snippet, citation in zip(self.__title, self.__snippet, self.__citation):
            title = self.__format_text(title)
            snipper = self.__format_text(snippet)
            searchtext = title + snipper
            self.__doi = re.search(r"""(doi: (10\..*?)\. )|(doi: (10\.\S+)\.$)""", citation.xpath("./text()")[0])
            self.__doi = [self.__doi.group(2) if self.__doi.group(2) else self.__doi.group(4)] if self.__doi else []
            for kw in self.__term:
                if kw.lower() in searchtext:
                    continue
                else:
                    self.__doi = []
                    break
            self.__doi_list += self.__doi
        return self.__doi_list

    def get_allpagedoi(self, page_text):
        print("Processing Page1")
        self.__results_amount = int(re.search(r"""<span class="value">(\d+(?:,?\d+)?)</span>.*?results""", page_text,
                                            re.DOTALL).group(1).replace(",", ""))
        self.get_doi(page_text)
        if self.__results_amount % 200 == 0:
            self.__step_num = self.__results_amount / 200 - 1
        else:
            self.__step_num = self.__results_amount // 200
        if self.__step_num:
            for page in range(2, self.__step_num + 2):
                print(f"Processing Page{page}")
                self.__size = 200
                self.__page = page
                self.__param = {
                    "term": self.__term,
                    "size": self.__size,
                    "page": self.__page
                }
                self.__page_text = self.get_text(url=self.url, param=self.__param)
                self.get_doi(self.__page_text)
        return self.__doi_list

    def scihuburl(self, doi_list):
        for doi in doi_list:
            self.__down_url.append(r"https://sci.bban.top/pdf/"+doi+".pdf")
        return self.__down_url

    @staticmethod
    def getpdf(down_url, path="./", direct=False):
        downloadpath = os.path.join(path, "download_url.txt")
        if os.path.isfile(downloadpath) and not direct:
            os.remove(downloadpath)
        for doiurl in down_url:
            if direct:
                r = requests.get(url=down_url)
                with open(os.path.join(path, os.path.basename(doiurl)), "wb") as f:
                     f.write(r.content)
            else:
                with open(downloadpath, "a") as u:
                    u.write(doiurl + "\n")


if __name__ == "__main__":
    term = input("Please input your keywords: ")
    if '"' in term:
        term = [i for i in term.split('"') if i not in ("", " ")]
    else:
        term = term.split(" ")
    downloaddir= input("Please specify the directory for downloading: ")
    direct = input("Do you want to download the pdf directly?[y/n]")
    while direct not in ["y", "n"]:
        print("You only can input y or n!")
        direct = input("Do you want to download the pdf directly?[y/n]")
    direct = True if direct == "y" else False
    getpub = Searchpubmed(term)
    page_text = getpub.get_text(getpub.url, getpub.param)
    doi_list = getpub.get_allpagedoi(page_text)
    down_url = getpub.scihuburl(doi_list)
    getpub.getpdf(down_url, downloaddir, direct)
最后編輯于
?著作權(quán)歸作者所有,轉(zhuǎn)載或內(nèi)容合作請(qǐng)聯(lián)系作者
【社區(qū)內(nèi)容提示】社區(qū)部分內(nèi)容疑似由AI輔助生成,瀏覽時(shí)請(qǐng)結(jié)合常識(shí)與多方信息審慎甄別。
平臺(tái)聲明:文章內(nèi)容(如有圖片或視頻亦包括在內(nèi))由作者上傳并發(fā)布,文章內(nèi)容僅代表作者本人觀點(diǎn),簡(jiǎn)書系信息發(fā)布平臺(tái),僅提供信息存儲(chǔ)服務(wù)。

友情鏈接更多精彩內(nèi)容