> library(devtools)
> install_github('immunogenomics/presto')
Downloading GitHub repo immunogenomics/presto@HEAD
These packages have more recent versions available.
It is recommended to update all of them.
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4: Rcpp (1.0.5 -> 1.0.6 ) [CRAN]
5: utf8 (1.1.4 -> 1.2.1 ) [CRAN]
6: crayon (1.3.4 -> 1.4.1 ) [CRAN]
7: cli (2.2.0 -> 2.3.1 ) [CRAN]
8: pillar (1.4.7 -> 1.5.1 ) [CRAN]
9: fansi (0.4.1 -> 0.4.2 ) [CRAN]
10: lifecycle (0.2.0 -> 1.0.0 ) [CRAN]
11: farver (2.0.3 -> 2.1.0 ) [CRAN]
12: withr (2.3.0 -> 2.4.1 ) [CRAN]
13: tibble (3.0.4 -> 3.1.0 ) [CRAN]
14: rlang (0.4.9 -> 0.4.10 ) [CRAN]
15: isoband (0.2.3 -> 0.2.4 ) [CRAN]
16: fastmap (1.0.1 -> 1.1.0 ) [CRAN]
17: cachem (1.0.1 -> 1.0.4 ) [CRAN]
18: memoise (1.1.0 -> 2.0.0 ) [CRAN]
19: mime (0.9 -> 0.10 ) [CRAN]
20: RSQLite (2.2.2 -> 2.2.4 ) [CRAN]
21: DBI (1.1.0 -> 1.1.1 ) [CRAN]
22: XML (3.99-0.5 -> 3.99-0.6 ) [CRAN]
23: formatR (1.7 -> 1.8 ) [CRAN]
24: matrixStats (0.57.0 -> 0.58.0 ) [CRAN]
25: RCurl (1.98-1.2 -> 1.98-1.3 ) [CRAN]
26: DelayedArray (0.16.0 -> 0.16.3 ) [CRAN]
27: GenomeInfoDb (1.26.2 -> 1.26.4 ) [CRAN]
28: MatrixGen... (1.2.0 -> 1.2.1 ) [CRAN]
29: RcppArmad... (0.10.1.2.0 -> 0.10.2.2.0) [CRAN]
30: cpp11 (0.2.4 -> 0.2.6 ) [CRAN]
31: dplyr (1.0.2 -> 1.0.5 ) [CRAN]
32: DESeq2 (1.30.0 -> 1.30.1 ) [CRAN]
33: tidyr (1.1.2 -> 1.1.3 ) [CRAN]
34: data.table (1.13.6 -> 1.14.0 ) [CRAN]
Enter one or more numbers, or an empty line to skip updates:3
√ checking for file 'C:\Users\Nano\AppData\Local\Temp\RtmpMfsJdO\remotes2d3c24d31e5c\immunogenomics-presto-052085d/DESCRIPTION' ...
- preparing 'presto':
√ checking DESCRIPTION meta-information ...
- cleaning src
- checking for LF line-endings in source and make files and shell scripts
- checking for empty or unneeded directories
- looking to see if a 'data/datalist' file should be added
- building 'presto_1.0.0.tar.gz'
Installing package into ‘C:/Users/Nano/Documents/R/win-library/4.0’
(as ‘lib’ is unspecified)
* installing *source* package 'presto' ...
** using staged installation
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/PROGRA~1/R/R-40~1.3/include" -DNDEBUG -I'C:/Users/Nano/Documents/R/win-library/4.0/Rcpp/include' -I'C:/Users/Nano/Documents/R/win-library/4.0/RcppArmadillo/include' -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/PROGRA~1/R/R-40~1.3/include" -DNDEBUG -I'C:/Users/Nano/Documents/R/win-library/4.0/Rcpp/include' -I'C:/Users/Nano/Documents/R/win-library/4.0/RcppArmadillo/include' -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c fast_wilcox.cpp -o fast_wilcox.o
fast_wilcox.cpp: In function 'std::__cxx11::list<float> cpp_in_place_rank_mean(arma::vec&, int, int)':
fast_wilcox.cpp:116:34: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
for (size_t i = idx_begin; i <= idx_end; i++) {
~~^~~~~~~~~~
C:/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o presto.dll tmp.def RcppExports.o fast_wilcox.o -LC:/PROGRA~1/R/R-40~1.3/bin/x64 -lR
installing to C:/Users/Nano/Documents/R/win-library/4.0/00LOCK-presto/00new/presto/libs/x64
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'presto'
finding HTML links ... 好了
exprs html
nnzeroGroups html
object_sce html
object_seurat html
pipe html
presto html
rank_matrix html
sumGroups html
top_markers html
wilcoxauc html
y html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (presto)
Error in library(presto) : 不存在叫‘presto’這個名字的程輯包
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