前言
這兩天琢磨了下spark-deep-learning和spark-sklearn兩個(gè)項(xiàng)目,但是感覺都不盡人如意。在training時(shí),都需要把數(shù)據(jù)broadcast到各個(gè)節(jié)點(diǎn)進(jìn)行并行訓(xùn)練,基本就失去實(shí)用價(jià)值了(tranning數(shù)據(jù)都會(huì)大于單節(jié)點(diǎn)內(nèi)存的好么),而且spark-deep-learning目前還沒有實(shí)現(xiàn)和tf cluster的結(jié)合。所以這個(gè)時(shí)候轉(zhuǎn)向了開源已久的yahoo的TensorFlowOnSpark項(xiàng)目。簡單了過了下他的源碼,大致理清楚了原理,這里算是記錄下來,也希望能幫到讀者。
TensorFlowOnSpark 代碼運(yùn)行剖析
從項(xiàng)目中打開examples/mnist/spark/mnist_spark/mnist_dist.py,
第一步通過pyspark創(chuàng)建SparkContext,這個(gè)過程其實(shí)就啟動(dòng)了Spark cluster,至于如何通過python啟動(dòng)spark 并且進(jìn)行相互通訊,具體可以參考我這篇文章:PySpark如何設(shè)置worker的python命令。
sc = SparkContext(conf=SparkConf().setAppName("mnist_spark"))
executors = sc._conf.get("spark.executor.instances")
第二步是接受一些命令行參數(shù),這個(gè)我就不貼了。
第三步是使用標(biāo)準(zhǔn)的pyspark API 從HDFS獲取圖片數(shù)據(jù),構(gòu)成一個(gè)dataframe/rdd:
dataRDD = images.map(lambda x: toNumpy(str(x[0])))
接著就是開始進(jìn)入正題,啟動(dòng)tf cluster了:
cluster = TFCluster.run(sc, mnist_dist.map_fun, args, args.cluster_size, num_ps, args.tensorboard, TFCluster.InputMode.SPARK)
TFCluster.run 里的sc 就是sparkcontext,mnist_dist.map_fun函數(shù)則包含了你的tensorflow業(yè)務(wù)代碼,在這個(gè)示例里就是minist的模型代碼,模型代碼具體細(xì)節(jié)代碼我們會(huì)晚點(diǎn)說。我們先看看TFCluster.run方法:
cluster_template = {}
cluster_template['ps'] = range(num_ps)
cluster_template['worker'] = range(num_ps, num_executors)
上面是確定parameter server和worker的數(shù)目,這兩個(gè)概念是和tf相關(guān)的。
接著會(huì)啟動(dòng)一個(gè)Server:
server = reservation.Server(num_executors)
server_addr = server.start()
在driver端啟動(dòng)一個(gè)Server,主要是為了監(jiān)聽待會(huì)spark executor端啟動(dòng)的tf worker,進(jìn)行協(xié)調(diào)。
# start TF nodes on all executors
logging.info("Starting TensorFlow on executors")
cluster_meta = {
'id': random.getrandbits(64),
'cluster_template': cluster_template,
'num_executors': num_executors,
'default_fs': defaultFS,
'working_dir': working_dir,
'server_addr': server_addr
}
上面的代碼獲取完整的啟動(dòng)tf cluster所需要的信息。建議大家可以去google下如何手動(dòng)配置tf cluster,然后就能更深入理解TensorFlowOnSpark是如何預(yù)先收集好哪些參數(shù)。
nodeRDD = sc.parallelize(range(num_executors), num_executors)
# start TF on a background thread (on Spark driver) to allow for feeding job
def _start():
nodeRDD.foreachPartition(TFSparkNode.run(map_fun,
tf_args,
cluster_meta,
tensorboard,
queues,
background=(input_mode == InputMode.SPARK)))
t = threading.Thread(target=_start)
t.start()
# wait for executors to register and start TFNodes before continuing
logging.info("Waiting for TFSparkNodes to start")
cluster_info = server.await_reservations()
logging.info("All TFSparkNodes started")
上面的第一段代碼其實(shí)是為了確保啟動(dòng)cluster_size個(gè)task,每個(gè)task對應(yīng)一個(gè)partition,每個(gè)partition其實(shí)只有一個(gè)元素,就是worker的編號(hào)。通過對partition進(jìn)行foreatch來啟動(dòng)對應(yīng)的tf worker(包含ps)。倒數(shù)第二行代碼我們又看到了,前面的那個(gè)server了,它會(huì)阻塞代碼往下執(zhí)行,直到所有tf worker都啟動(dòng)為止。
到這里我們也可以看到,一個(gè)spark executor可能會(huì)啟動(dòng)多個(gè)tf worker。
現(xiàn)在我們進(jìn)入 TFSparkNode.run看看,這里面包含了具體如何啟動(dòng)tf worker的邏輯,記得這些代碼已經(jīng)在executor執(zhí)行了。
def run(fn, tf_args, cluster_meta, tensorboard, queues, background):
"""
Wraps the TensorFlow main function in a Spark mapPartitions-compatible function.
"""
def _mapfn(iter):
首先定義了一個(gè)函數(shù)_mapfn,他的參數(shù)是一個(gè)iter,這個(gè)iter 沒啥用,就是前面的worker編號(hào),只有一個(gè)元素。該函數(shù)里主要作用其實(shí)就是啟動(dòng)tf worker(PS)的,并且運(yùn)行用戶的代碼的:
client = reservation.Client(cluster_meta['server_addr'])
cluster_info = client.get_reservations()
啟動(dòng)的過程中會(huì)啟動(dòng)一個(gè)client,連接我們前面說的Server,報(bào)告自己成功啟動(dòng)了。
if job_name == 'ps' or background:
# invoke the TensorFlow main function in a background thread
logging.info("Starting TensorFlow {0}:{1} on cluster node {2} on background process".format(job_name, task_index, worker_num))
p = multiprocessing.Process(target=fn, args=(tf_args, ctx))
p.start()
# for ps nodes only, wait indefinitely in foreground thread for a "control" event (None == "stop")
if job_name == 'ps':
queue = TFSparkNode.mgr.get_queue('control')
done = False
while not done:
msg = queue.get(block=True)
logging.info("Got msg: {0}".format(msg))
if msg == None:
logging.info("Terminating PS")
TFSparkNode.mgr.set('state', 'stopped')
done = True
queue.task_done()
else:
# otherwise, just run TF function in the main executor/worker thread
logging.info("Starting TensorFlow {0}:{1} on cluster node {2} on foreground thread".format(job_name, task_index, worker_num))
fn(tf_args, ctx)
logging.info("Finished TensorFlow {0}:{1} on cluster node {2}".format(job_name, task_index, worker_num))
這里會(huì)判斷是ps還是worker。如果是后臺(tái)運(yùn)行,則通過multiprocessing.Process直接運(yùn)行我們前年提到的mnist_dist.map_fun方法,而mnist_dist.map_fun其實(shí)包含了tf session的邏輯代碼。當(dāng)然這個(gè)時(shí)候模型雖然啟動(dòng)了,但是因?yàn)樵讷@取數(shù)據(jù)時(shí)使用了queue.get(block=True) 時(shí),這個(gè)時(shí)候還沒有數(shù)據(jù)進(jìn)來,所以會(huì)被阻塞住。值得注意的是,這里的代碼會(huì)發(fā)送給spark起的python worker里執(zhí)行。
在獲得cluster對象后,我們就可以調(diào)用train方法做真實(shí)的訓(xùn)練了,本質(zhì)上就是開始喂數(shù)據(jù):
if args.mode == "train":
cluster.train(dataRDD, args.epochs)
進(jìn)入 cluster.train看下,會(huì)進(jìn)入如下代碼:
unionRDD.foreachPartition(TFSparkNode.train(self.cluster_info, self.cluster_meta, qname))
這里會(huì)把數(shù)據(jù)按partition的方式喂給每個(gè)TF worker(通過調(diào)用train方法):
def _train(iter):
queue = mgr.get_queue(qname)
....
for item in iter:
count += 1
queue.put(item, block=True)
....
queue.join()
這里會(huì)拿到tf的queue,然后通過iter(也就是實(shí)際的spark rdd包含的訓(xùn)練數(shù)據(jù))往里面放,如果放滿了就會(huì)阻塞。
直至,大致流程就完成了?,F(xiàn)在我們回過頭來看我們的業(yè)務(wù)代碼mnist_dist.map_fun,該方法其實(shí)是在每個(gè)tf worker上執(zhí)行的:
if job_name == "ps":
server.join()
elif job_name == "worker":
# Assigns ops to the local worker by default.
with tf.device(tf.train.replica_device_setter(
worker_device="/job:worker/task:%d" % task_index,
cluster=cluster)):
簡單的做了判定,如果是ps則停止在這,否則執(zhí)行構(gòu)建模型的工作。在with tf.device.. 里面就是開始定義模型什么的了,標(biāo)準(zhǔn)的tf 代碼了:
# Variables of the hidden layer
hid_w = tf.Variable(tf.truncated_normal([IMAGE_PIXELS * IMAGE_PIXELS, hidden_units],
stddev=1.0 / IMAGE_PIXELS), name="hid_w")
hid_b = tf.Variable(tf.zeros([hidden_units]), name="hid_b")
tf.summary.histogram("hidden_weights", hid_w)
當(dāng)然,在TensorFlowOnSpark的示例代碼里,使用了Supervisor:
if args.mode == "train":
sv = tf.train.Supervisor(is_chief=(task_index == 0),
logdir=logdir,
init_op=init_op,
summary_op=None,
saver=saver,
global_step=global_step,
stop_grace_secs=300,
save_model_secs=10)
with sv.managed_session(server.target) as sess:
step = 0
tf_feed = TFNode.DataFeed(ctx.mgr, args.mode == "train")
batch_xs, batch_ys = feed_dict(tf_feed.next_batch(batch_size))
TFNode.DataFeed提供了一個(gè)便捷的獲取批量數(shù)據(jù)的方式,讓你不用操心queue的事情。
在訓(xùn)練達(dá)到必要的數(shù)目后,你可以停止訓(xùn)練:
if sv.should_stop() or step >= args.steps:
tf_feed.terminate()
現(xiàn)在整個(gè)流程應(yīng)該是比較清晰了。