bowtie2

$mkdir bowtie2
$cd bowtie2/
$wget -c https://sourceforge.net/projects/bowtie-bio/files/bowtie2/2.3.5.1/bowtie2-2.3.5.1-sra-linux-x86_64.zip
$unzip bowtie2-2.3.5.1-sra-linux-x86_64.zip
$cd bowtie2-2.3.5.1-sra-linux-x86_64/
$./bowtie2

bcftools

 $mkdir bcftools
 $cd bcftools/
 $wget -c https://github.com/samtools/bcftools/releases/download/1.10/bcftools-1.10.tar.bz2
 $tar -jxvf    bcftools-1.10.tar.bz2
 $cd bcftools-1.10/
 $./configure
 $sudo apt-get install zlib1g-dev
 $sudo apt-get install libbz2-dev
 $sudo apt-get install liblzma-dev
 $./configure --prefix=/mnt/d/biosoft/bcftools/bcftools-1.10/
 $make
 $make install