R包安裝比數(shù)據(jù)分析難多了

(base) root@BC-25-at-66-181:~# R

R version 4.1.0 (2021-05-18) -- "Camp Pontanezen"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

  Natural language support but running in an English locale

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(Seurat)
Error in library(Seurat) : there is no package called 'Seurat'
> install.packages("Seurat")
Installing package into '/usr/local/lib/R/site-library'
(as 'lib' is unspecified)
also installing the dependencies 'RSpectra', 'uwot'

trying URL 'https://cloud.r-project.org/src/contrib/RSpectra_0.16-0.tar.gz'
Content type 'application/x-gzip' length 125821 bytes (122 KB)
==================================================
downloaded 122 KB

trying URL 'https://cloud.r-project.org/src/contrib/uwot_0.1.10.tar.gz'
Content type 'application/x-gzip' length 96150 bytes (93 KB)
==================================================
downloaded 93 KB

trying URL 'https://cloud.r-project.org/src/contrib/Seurat_4.0.2.tar.gz'
Content type 'application/x-gzip' length 1456048 bytes (1.4 MB)
==================================================
downloaded 1.4 MB

ERROR: failed to lock directory '/usr/local/lib/R/site-library' for modifying
Try removing '/usr/local/lib/R/site-library/00LOCK-RSpectra'
ERROR: dependency 'RSpectra' is not available for package 'uwot'
* removing '/usr/local/lib/R/site-library/uwot'
ERROR: dependency 'uwot' is not available for package 'Seurat'
* removing '/usr/local/lib/R/site-library/Seurat'

The downloaded source packages are in
    '/tmp/RtmphMJsXH/downloaded_packages'
Warning messages:
1: In install.packages("Seurat") :
  installation of package 'RSpectra' had non-zero exit status
2: In install.packages("Seurat") :
  installation of package 'uwot' had non-zero exit status
3: In install.packages("Seurat") :
  installation of package 'Seurat' had non-zero exit status

那就首先去/usr/local/lib/R/site-library/00LOCK-RSpectra

把00LOCK-RSpectra刪掉
把RSpectra和uwot這兩個依賴包安裝上去 然后再裝Seurat就成功了

image.png