部署Linux運(yùn)算環(huán)境
安裝Anaconda
Anaconda是Python和R編程語言的開源包管理器、環(huán)境管理器和發(fā)行版。它通常用于數(shù)據(jù)科學(xué)、機(jī)器學(xué)習(xí)、大規(guī)模數(shù)據(jù)處理、科學(xué)計(jì)算和預(yù)測分析。
國內(nèi)鏡像地址（國外連接下載慢，選擇使用國內(nèi)鏡像下載）：
https://mirrors.tuna.tsinghua.edu.cn/anaconda/archive/
sudo wget https://mirrors.tuna.tsinghua.edu.cn/anaconda/archive/Anaconda3-2023.07-2-Linux-x86_64.sh
bash Anaconda3-2023.07-2-Linux-x86_64.sh #安裝
參考：
配置Anaconda源
解決Anaconda報(bào)The channel is not accessible源通道不可用問題
安裝Anaconda源的包
https://anaconda.org/bioconda/bowtie2
https://anaconda.org/bioconda/getorganelle
#conda install
#To install this package run one of the following:
conda install -c bioconda getorganelle
安裝GetOrganelle組裝軟件
零基礎(chǔ)教程 | 葉綠體基因組組裝 - GetOrganelle
conda create -n getorganelle #創(chuàng)建環(huán)境
conda activate getorganelle? #激活環(huán)境
conda install -c bioconda getorganelle
get_organelle_config.py --add embplant_pt,embplant_mt
wget https://github.com/Kinggerm/GetOrganelleGallery/raw/master/Test/reads/Arabidopsis_simulated.1.fq.gz
wget https://github.com/Kinggerm/GetOrganelleGallery/raw/master/Test/reads/Arabidopsis_simulated.2.fq.gz
md5sum Arabidopsis_simulated.*.fq.gz?
#then verify the integrity of downloaded files using md5sum:
get_organelle_from_reads.py -1 Arabidopsis_simulated.1.fq.gz -2 Arabidopsis_simulated.2.fq.gz -t 1 -o Arabidopsis_simulated.plastome -F embplant_pt -R 10
wget https://github.com/Kinggerm/GetOrganelleGallery/blob/master/Test/reads/SRR5602600_1.fastq.gz
wget https://github.com/Kinggerm/GetOrganelleGallery/blob/master/Test/reads/SRR5602600_2.fastq.gz
查看Linux系統(tǒng)負(fù)荷情況
Ubuntu 查看系統(tǒng)資源占用(CPU、內(nèi)存、網(wǎng)絡(luò))_ubuntu查看cpu占用率-CSDN博客
系統(tǒng)監(jiān)視器（CPU、內(nèi)存、網(wǎng)絡(luò)圖）
gnome-system-monitor
